umop.v1.omop.diagnoses package¶
Submodules¶
umop.v1.omop.diagnoses.diagnoses module¶
OMOP Diagnoses Documentation.
- umop.v1.omop.diagnoses.diagnoses.get_diagnoses(engine, pat_list=[])¶
This method returns full diagnoses list for given patient ids.
Returns PERSON_ID, VISIT_OCCURRENCE_ID, CONTACT_DATE (random shifted date), SNOMED_CODE, PRINCIPAL_PROB_YN, ENC_TYPE
- umop.v1.omop.diagnoses.diagnoses.get_icd10_codes(engine, keyword=None)¶
This method returns ICD10CM codes for given keyword.
Returns CONCEPT_ID, CONCEPT_NAME, CONCEPT_CODE, CONCEPT_CLASS, VOCABULARY_ID, VOCABULARY_NAME
- umop.v1.omop.diagnoses.diagnoses.get_snomed_codes(engine, keyword=None)¶
This method returns SNOMED codes for given keyword.
Returns CONCEPT_ID, CONCEPT_NAME, CONCEPT_CODE, CONCEPT_CLASS, VOCABULARY_ID, VOCABULARY_NAME
- umop.v1.omop.diagnoses.diagnoses.icd10_to_snomed(engine, icd10s=[])¶
This method returns corresponding SNOMED concept_id to given ICD10CM codes.
NOTE This method returns SNOMED CONCEPT_ID, not to be confused with SNOMED CONCEPT_CODE.
Returns ICD10_CODE, SNOMED_CONCEPT_ID